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Interaction information
Interaction summary
Short label
TRANSLATION INITIATION FACTOR-16S RIBOSOMAL RNA
Full name
TRANSLATION INITIATION FACTOR interacts with 16S RIBOSOMAL RNA
Source database
RCSB PDB
ID
1HR0
Date modified
2011-03-24 01:41:29 JST
Protein information
Short label
TRANSLATION INITIATION FACTOR
Full name
Chain W of model 1HR0: TRANSLATION INITIATION FACTOR
Origin
Escherichia coli
NCBI Taxonomy ID
562
Name
Escherichia coli
Synonyms
16 synonym(s).
"Bacillus coli" Migula 1895
"Bacterium coli commune" Escherich 1885
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
Bacillus coli
Bacterium coli
Bacterium coli commune
Enterococcus coli
Escherchia coli
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
Escherichia coli retron Ec107
Escherichia coli retron Ec67
Escherichia coli retron Ec79
Escherichia coli retron Ec86
Eschericia coli
bacterium 10a
bacterium E3
Sequence
1HR0W:TRANSLATION INITIATION FACTOR
RNA information
Short label
16S RIBOSOMAL RNA
Full name
Chain A of model 1HR0: 16S RIBOSOMAL RNA
Cross references
1 item(s)
GenBank Nucleotide
155076
Sequence
1HR0A:16S RIBOSOMAL RNA
Experiments (1)
Experiment 1
carter-2001
Full name
X-ray diffraction
Detection method
x-ray crystallography (MI:0114)
Term ID
MI:0114
Name
x-ray crystallography
Definition
Analysis of a diffraction pattern generated by a single crystal. X-rays have a wavelength, typically around 1 Angstrom (the diameter of a hydrogen atom). If a narrow parallel beam of X-rays is directed at a sample of a pure protein, most of the X-rays will pass straight through it. A small fraction, however, will be scattered by the atoms in the sample. If the sample is a well-ordered crystal, the scattered waves will reinforce one another at certain points and will appear as diffraction spots when the X-rays are recorded by a suitable detector. The position and intensity of each spot in the X-ray diffraction pattern contain information about the position and nature of the atoms in the crystal. The three-dimensional structure of a large molecule can be deduced from the electron-density map of its crystal. In recent years X-ray diffraction analysis has become increasingly automated, and now the slowest step is likely to be the production of suitable macromolecule crystals. This requires high concentration of very pure macromolecule and empirical searching for the proper crystallisation conditions.
Synonyms
2 synonym(s)
X-ray (PSI-MI-alternate)
x-ray diffraction (PSI-MI-short)
Is-a
2 item(s)
MI:0013
biophysical
MI:0659
experimental feature detection
Host organisms
1 host organism(s)
Origin
Escherichia coli
NCBI Taxonomy ID
562
Name
Escherichia coli
Synonyms
16 synonym(s).
"Bacillus coli" Migula 1895
"Bacterium coli commune" Escherich 1885
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
Bacillus coli
Bacterium coli
Bacterium coli commune
Enterococcus coli
Escherchia coli
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
Escherichia coli retron Ec107
Escherichia coli retron Ec67
Escherichia coli retron Ec79
Escherichia coli retron Ec86
Eschericia coli
bacterium 10a
bacterium E3
Reference
CARTER, A P, et al. , Science 2001 Jan;291(5503):498-501
PMID
11228145
Title
Crystal structure of an initiation factor bound to the 30S ribosomal subunit.
Authors
CARTER, A P, et al.
CARTER, A P
CLEMONS, W M
BRODERSEN, D E
MORGAN-WARREN, R J
HARTSCH, T
WIMBERLY, B T
RAMAKRISHNAN, V
Citation
Science 2001 Jan;291(5503):498-501
References (1)
Reference 1
CARTER, A P, et al. , Science 2001 Jan;291(5503):498-501
PMID
11228145
Title
Crystal structure of an initiation factor bound to the 30S ribosomal subunit.
Authors
CARTER, A P, et al.
CARTER, A P
CLEMONS, W M
BRODERSEN, D E
MORGAN-WARREN, R J
HARTSCH, T
WIMBERLY, B T
RAMAKRISHNAN, V
Citation
Science 2001 Jan;291(5503):498-501
Related articles (1)
Article 1
CARTER, A P, et al. , Science 2001 Jan;291(5503):498-501
PMID
11228145
Title
Crystal structure of an initiation factor bound to the 30S ribosomal subunit.
Authors
CARTER, A P, et al.
CARTER, A P
CLEMONS, W M
BRODERSEN, D E
MORGAN-WARREN, R J
HARTSCH, T
WIMBERLY, B T
RAMAKRISHNAN, V
Citation
Science 2001 Jan;291(5503):498-501
Attributes (3)
Attributes
3 attribute(s)
3d-structure
CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT
3d-resolution
3.20A
3d-r-factors
working 21.780%, free 26.090%