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Interaction information
Interaction summary
Short label
50S RIBOSOMAL PROTEIN L18-23S RIBOSOMAL RNA
Full name
50S RIBOSOMAL PROTEIN L18 interacts with 23S RIBOSOMAL RNA
Source database
RCSB PDB ID
Date modified
2011-03-25 14:29:20 JST
Protein information
Short label
50S RIBOSOMAL PROTEIN L18
Full name
Chain O of model 2J28: 50S RIBOSOMAL PROTEIN L18
Origin
Escherichia coli
NCBI Taxonomy ID
Name
Escherichia coli
Synonyms
16 synonym(s).
"Bacillus coli" Migula 1895
"Bacterium coli commune" Escherich 1885
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
Bacillus coli
Bacterium coli
Bacterium coli commune
Enterococcus coli
Escherchia coli
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
Escherichia coli retron Ec107
Escherichia coli retron Ec67
Escherichia coli retron Ec79
Escherichia coli retron Ec86
Eschericia coli
bacterium 10a
bacterium E3
Cross references
1 item(s)
UniProt
Sequence
RNA information
Short label
23S RIBOSOMAL RNA
Full name
Chain B of model 2J28: 23S RIBOSOMAL RNA
Origin
Escherichia coli
NCBI Taxonomy ID
Name
Escherichia coli
Synonyms
16 synonym(s).
"Bacillus coli" Migula 1895
"Bacterium coli commune" Escherich 1885
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
Bacillus coli
Bacterium coli
Bacterium coli commune
Enterococcus coli
Escherchia coli
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
Escherichia coli retron Ec107
Escherichia coli retron Ec67
Escherichia coli retron Ec79
Escherichia coli retron Ec86
Eschericia coli
bacterium 10a
bacterium E3
Sequence
Experiments (1)
Experiment 1
halic-2006
Full name
ELECTRON MICROSCOPY
Detection method
electron microscopy (MI:0040)
Term ID
Name
electron microscopy
Definition
Electron microscopy methods provide insights into the structure of biological macromolecules and their supramolecular assemblies. Resolution is on average around 10 Angstroms but can reach the atomic level when the samples analysed are 2D crystals. Different types of samples can be analysed by electron microscopy: crystals, single particles like viruses, macromolecular complexes or entire cells and tissue sections. Samples can be chemically fixed or vitrified by rapid freezing in liquid ethane, and then transferred into the electron microscope. Data collection consists of the recording of electron diffraction data (2D crystals) and images. Depending on the type of sample, different approaches are used to analyse and merge images and electron diffraction data.
Synonyms
2 synonym(s)
Electron cryomicroscopy (PSI-MI-alternate)
Electron crystallography (PSI-MI-alternate)
Is-a
1 item(s)
MI:0428
imaging technique
Host organisms
1 host organism(s)
Origin
Escherichia coli
NCBI Taxonomy ID
Name
Escherichia coli
Synonyms
16 synonym(s).
"Bacillus coli" Migula 1895
"Bacterium coli commune" Escherich 1885
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
Bacillus coli
Bacterium coli
Bacterium coli commune
Enterococcus coli
Escherchia coli
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
Escherichia coli retron Ec107
Escherichia coli retron Ec67
Escherichia coli retron Ec79
Escherichia coli retron Ec86
Eschericia coli
bacterium 10a
bacterium E3
Reference
HALIC, Mario, et al. , Nature 2006 Nov;444(7118):507-11
PMID
Title
Following the signal sequence from ribosomal tunnel exit to signal recognition particle.
Authors
HALIC, Mario, et al.
HALIC, Mario
BLAU, Michael
BECKER, Thomas
MIELKE, Thorsten
POOL, Martin R
WILD, Klemens
SINNING, Irmgard
BECKMANN, Roland
Citation
Nature 2006 Nov;444(7118):507-11
References (1)
Reference 1
HALIC, Mario, et al. , Nature 2006 Nov;444(7118):507-11
PMID
Title
Following the signal sequence from ribosomal tunnel exit to signal recognition particle.
Authors
HALIC, Mario, et al.
HALIC, Mario
BLAU, Michael
BECKER, Thomas
MIELKE, Thorsten
POOL, Martin R
WILD, Klemens
SINNING, Irmgard
BECKMANN, Roland
Citation
Nature 2006 Nov;444(7118):507-11
Related articles (1)
Article 1
HALIC, Mario, et al. , Nature 2006 Nov;444(7118):507-11
PMID
Title
Following the signal sequence from ribosomal tunnel exit to signal recognition particle.
Authors
HALIC, Mario, et al.
HALIC, Mario
BLAU, Michael
BECKER, Thomas
MIELKE, Thorsten
POOL, Martin R
WILD, Klemens
SINNING, Irmgard
BECKMANN, Roland
Citation
Nature 2006 Nov;444(7118):507-11
Attributes (2)
Attributes
2 attribute(s)
3d-structure
MODEL OF E. COLI SRP BOUND TO 70S RNCS
3d-resolution
8.0A
2J28
562
2J28O:50S RIBOSOMAL PROTEIN L18
MI:0040
17086193