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Interaction information
Interaction summary
Short label
PREPROTEIN TRANSLOCASE SecY SUBUNIT-23S RIBOSOMAL RNA
Full name
PREPROTEIN TRANSLOCASE SecY SUBUNIT interacts with 23S RIBOSOMAL RNA
Source database
RCSB PDB ID
Date modified
2011-03-25 14:48:36 JST
Protein information
Short label
PREPROTEIN TRANSLOCASE SecY SUBUNIT
Full name
Chain A of model 3BO1: PREPROTEIN TRANSLOCASE SecY SUBUNIT
Origin
Escherichia coli
NCBI Taxonomy ID
Name
Escherichia coli
Synonyms
16 synonym(s).
"Bacillus coli" Migula 1895
"Bacterium coli commune" Escherich 1885
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
Bacillus coli
Bacterium coli
Bacterium coli commune
Enterococcus coli
Escherchia coli
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
Escherichia coli retron Ec107
Escherichia coli retron Ec67
Escherichia coli retron Ec79
Escherichia coli retron Ec86
Eschericia coli
bacterium 10a
bacterium E3
Sequence
RNA information
Short label
23S RIBOSOMAL RNA
Full name
Chain E of model 3BO1: 23S RIBOSOMAL RNA
Cross references
1 item(s)
GenBank Nucleotide
Sequence
Experiments (1)
Experiment 1
menetret-2007
Full name
ELECTRON MICROSCOPY
Detection method
electron microscopy (MI:0040)
Term ID
Name
electron microscopy
Definition
Electron microscopy methods provide insights into the structure of biological macromolecules and their supramolecular assemblies. Resolution is on average around 10 Angstroms but can reach the atomic level when the samples analysed are 2D crystals. Different types of samples can be analysed by electron microscopy: crystals, single particles like viruses, macromolecular complexes or entire cells and tissue sections. Samples can be chemically fixed or vitrified by rapid freezing in liquid ethane, and then transferred into the electron microscope. Data collection consists of the recording of electron diffraction data (2D crystals) and images. Depending on the type of sample, different approaches are used to analyse and merge images and electron diffraction data.
Synonyms
2 synonym(s)
Electron cryomicroscopy (PSI-MI-alternate)
Electron crystallography (PSI-MI-alternate)
Is-a
1 item(s)
MI:0428
imaging technique
Host organisms
1 host organism(s)
Origin
Escherichia coli
NCBI Taxonomy ID
Name
Escherichia coli
Synonyms
16 synonym(s).
"Bacillus coli" Migula 1895
"Bacterium coli commune" Escherich 1885
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
Bacillus coli
Bacterium coli
Bacterium coli commune
Enterococcus coli
Escherchia coli
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
Escherichia coli retron Ec107
Escherichia coli retron Ec67
Escherichia coli retron Ec79
Escherichia coli retron Ec86
Eschericia coli
bacterium 10a
bacterium E3
Reference
MéNéTRET, Jean-François, et al. , Mol. Cell 2007 Dec;28(6):1083-92
PMID
Title
Ribosome binding of a single copy of the SecY complex: implications for protein translocation.
Authors
MéNéTRET, Jean-François, et al.
MéNéTRET, Jean-François
SCHALETZKY, Julia
CLEMONS, William M
OSBORNE, Andrew R
SKåNLAND, Sigrid S
DENISON, Carilee
GYGI, Steven P
KIRKPATRICK, Don S
PARK, Eunyong
LUDTKE, Steven J
RAPOPORT, Tom A
AKEY, Christopher W
Citation
Mol. Cell 2007 Dec;28(6):1083-92
References (1)
Reference 1
MéNéTRET, Jean-François, et al. , Mol. Cell 2007 Dec;28(6):1083-92
PMID
Title
Ribosome binding of a single copy of the SecY complex: implications for protein translocation.
Authors
MéNéTRET, Jean-François, et al.
MéNéTRET, Jean-François
SCHALETZKY, Julia
CLEMONS, William M
OSBORNE, Andrew R
SKåNLAND, Sigrid S
DENISON, Carilee
GYGI, Steven P
KIRKPATRICK, Don S
PARK, Eunyong
LUDTKE, Steven J
RAPOPORT, Tom A
AKEY, Christopher W
Citation
Mol. Cell 2007 Dec;28(6):1083-92
Related articles (1)
Article 1
MéNéTRET, Jean-François, et al. , Mol. Cell 2007 Dec;28(6):1083-92
PMID
Title
Ribosome binding of a single copy of the SecY complex: implications for protein translocation.
Authors
MéNéTRET, Jean-François, et al.
MéNéTRET, Jean-François
SCHALETZKY, Julia
CLEMONS, William M
OSBORNE, Andrew R
SKåNLAND, Sigrid S
DENISON, Carilee
GYGI, Steven P
KIRKPATRICK, Don S
PARK, Eunyong
LUDTKE, Steven J
RAPOPORT, Tom A
AKEY, Christopher W
Citation
Mol. Cell 2007 Dec;28(6):1083-92
Attributes (1)
Attributes
1 attribute(s)
3d-structure
Ribosome-SecY complex
3BO1
562
3BO1A:PREPROTEIN TRANSLOCASE SecY SUBUNIT
33357927
MI:0040
18158904