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Interaction information
Interaction summary
Short label
SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)-4.5 S RNA DOMAIN IV
Full name
SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG) interacts with 4.5 S RNA DOMAIN IV
Source database
RCSB PDB
ID
1DUL
Date modified
2011-03-25 15:23:45 JST
Protein information
Short label
SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
Full name
Chain A of model 1DUL: SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
Origin
Escherichia coli
NCBI Taxonomy ID
562
Name
Escherichia coli
Synonyms
16 synonym(s).
"Bacillus coli" Migula 1895
"Bacterium coli commune" Escherich 1885
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
Bacillus coli
Bacterium coli
Bacterium coli commune
Enterococcus coli
Escherchia coli
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
Escherichia coli retron Ec107
Escherichia coli retron Ec67
Escherichia coli retron Ec79
Escherichia coli retron Ec86
Eschericia coli
bacterium 10a
bacterium E3
Cross references
1 item(s)
UniProt
P07019
Sequence
1DULA:SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
RNA information
Short label
4.5 S RNA DOMAIN IV
Full name
Chain B of model 1DUL: 4.5 S RNA DOMAIN IV
Cross references
1 item(s)
UniProt
P07019
Sequence
1DULB:4.5 S RNA DOMAIN IV
Experiments (1)
Experiment 1
batey-2000
Full name
X-ray diffraction
Detection method
x-ray crystallography (MI:0114)
Term ID
MI:0114
Name
x-ray crystallography
Definition
Analysis of a diffraction pattern generated by a single crystal. X-rays have a wavelength, typically around 1 Angstrom (the diameter of a hydrogen atom). If a narrow parallel beam of X-rays is directed at a sample of a pure protein, most of the X-rays will pass straight through it. A small fraction, however, will be scattered by the atoms in the sample. If the sample is a well-ordered crystal, the scattered waves will reinforce one another at certain points and will appear as diffraction spots when the X-rays are recorded by a suitable detector. The position and intensity of each spot in the X-ray diffraction pattern contain information about the position and nature of the atoms in the crystal. The three-dimensional structure of a large molecule can be deduced from the electron-density map of its crystal. In recent years X-ray diffraction analysis has become increasingly automated, and now the slowest step is likely to be the production of suitable macromolecule crystals. This requires high concentration of very pure macromolecule and empirical searching for the proper crystallisation conditions.
Synonyms
2 synonym(s)
X-ray (PSI-MI-alternate)
x-ray diffraction (PSI-MI-short)
Is-a
2 item(s)
MI:0013
biophysical
MI:0659
experimental feature detection
Host organisms
1 host organism(s)
Origin
Escherichia coli
NCBI Taxonomy ID
562
Name
Escherichia coli
Synonyms
16 synonym(s).
"Bacillus coli" Migula 1895
"Bacterium coli commune" Escherich 1885
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
Bacillus coli
Bacterium coli
Bacterium coli commune
Enterococcus coli
Escherchia coli
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
Escherichia coli retron Ec107
Escherichia coli retron Ec67
Escherichia coli retron Ec79
Escherichia coli retron Ec86
Eschericia coli
bacterium 10a
bacterium E3
Reference
BATEY, R T, et al. , Science 2000 Feb;287(5456):1232-9
PMID
10678824
Title
Crystal structure of the ribonucleoprotein core of the signal recognition particle.
Authors
BATEY, R T, et al.
BATEY, R T
RAMBO, R P
LUCAST, L
RHA, B
DOUDNA, J A
Citation
Science 2000 Feb;287(5456):1232-9
References (1)
Reference 1
BATEY, R T, et al. , Science 2000 Feb;287(5456):1232-9
PMID
10678824
Title
Crystal structure of the ribonucleoprotein core of the signal recognition particle.
Authors
BATEY, R T, et al.
BATEY, R T
RAMBO, R P
LUCAST, L
RHA, B
DOUDNA, J A
Citation
Science 2000 Feb;287(5456):1232-9
Related articles (1)
Article 1
BATEY, R T, et al. , Science 2000 Feb;287(5456):1232-9
PMID
10678824
Title
Crystal structure of the ribonucleoprotein core of the signal recognition particle.
Authors
BATEY, R T, et al.
BATEY, R T
RAMBO, R P
LUCAST, L
RHA, B
DOUDNA, J A
Citation
Science 2000 Feb;287(5456):1232-9
Attributes (3)
Attributes
3 attribute(s)
3d-structure
STRUCTURE OF THE RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
3d-resolution
1.80A
3d-r-factors
working 19.900%, free 22.100%