Interaction information

Interaction summary

Short label

SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)-4.5 S RNA DOMAIN IV

Full name

SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG) interacts with 4.5 S RNA DOMAIN IV

Source database

RCSB PDB

ID

1DUL

Date modified

2011-03-25 15:23:45 JST

Protein information

Short label

SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)

Full name

Chain A of model 1DUL: SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)

Origin

Escherichia coli

NCBI Taxonomy ID

562

Name

Escherichia coli

Synonyms

16 synonym(s).

• "Bacillus coli" Migula 1895
• "Bacterium coli commune" Escherich 1885
• "Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
• Bacillus coli
• Bacterium coli
• Bacterium coli commune
• Enterococcus coli
• Escherchia coli
• Escherichia coli (Migula 1895) Castellani and Chalmers 1919
• Escherichia coli retron Ec107
• Escherichia coli retron Ec67
• Escherichia coli retron Ec79
• Escherichia coli retron Ec86
• Eschericia coli
• bacterium 10a
• bacterium E3

Cross references

1 item(s)

UniProt

P07019

Sequence

1DULA:SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)

RNA information

Short label

4.5 S RNA DOMAIN IV

Full name

Chain B of model 1DUL: 4.5 S RNA DOMAIN IV

Cross references

1 item(s)

UniProt

P07019

Sequence

1DULB:4.5 S RNA DOMAIN IV

Experiments (1)

Experiment 1

batey-2000

Full name

X-ray diffraction

Detection method

x-ray crystallography (MI:0114)

Term ID

MI:0114

Name

x-ray crystallography

Definition

Analysis of a diffraction pattern generated by a single crystal. X-rays have a wavelength, typically around 1 Angstrom (the diameter of a hydrogen atom). If a narrow parallel beam of X-rays is directed at a sample of a pure protein, most of the X-rays will pass straight through it. A small fraction, however, will be scattered by the atoms in the sample. If the sample is a well-ordered crystal, the scattered waves will reinforce one another at certain points and will appear as diffraction spots when the X-rays are recorded by a suitable detector. The position and intensity of each spot in the X-ray diffraction pattern contain information about the position and nature of the atoms in the crystal. The three-dimensional structure of a large molecule can be deduced from the electron-density map of its crystal. In recent years X-ray diffraction analysis has become increasingly automated, and now the slowest step is likely to be the production of suitable macromolecule crystals. This requires high concentration of very pure macromolecule and empirical searching for the proper crystallisation conditions.

Synonyms

2 synonym(s)

• X-ray (PSI-MI-alternate)
• x-ray diffraction (PSI-MI-short)

Is-a

2 item(s)

MI:0013

biophysical

MI:0659

experimental feature detection

Host organisms

1 host organism(s)

Origin

Escherichia coli

NCBI Taxonomy ID

562

Name

Escherichia coli

Synonyms

16 synonym(s).

• "Bacillus coli" Migula 1895
• "Bacterium coli commune" Escherich 1885
• "Bacterium coli" (Migula 1895) Lehmann and Neumann 1896
• Bacillus coli
• Bacterium coli
• Bacterium coli commune
• Enterococcus coli
• Escherchia coli
• Escherichia coli (Migula 1895) Castellani and Chalmers 1919
• Escherichia coli retron Ec107
• Escherichia coli retron Ec67
• Escherichia coli retron Ec79
• Escherichia coli retron Ec86
• Eschericia coli
• bacterium 10a
• bacterium E3

Reference

BATEY, R T, et al., Science 2000 Feb;287(5456):1232-9

PMID

10678824

Title

Crystal structure of the ribonucleoprotein core of the signal recognition particle.

Authors

BATEY, R T, et al.

• BATEY, R T
• RAMBO, R P
• LUCAST, L
• RHA, B
• DOUDNA, J A

Citation

Science 2000 Feb;287(5456):1232-9

References (1)

Reference 1

BATEY, R T, et al., Science 2000 Feb;287(5456):1232-9

PMID

10678824

Title

Crystal structure of the ribonucleoprotein core of the signal recognition particle.

Authors

BATEY, R T, et al.

• BATEY, R T
• RAMBO, R P
• LUCAST, L
• RHA, B
• DOUDNA, J A

Citation

Science 2000 Feb;287(5456):1232-9

Related articles (1)

Article 1

BATEY, R T, et al., Science 2000 Feb;287(5456):1232-9

PMID

10678824

Title

Crystal structure of the ribonucleoprotein core of the signal recognition particle.

Authors

BATEY, R T, et al.

• BATEY, R T
• RAMBO, R P
• LUCAST, L
• RHA, B
• DOUDNA, J A

Citation

Science 2000 Feb;287(5456):1232-9

Attributes (3)

Attributes

3 attribute(s)

3d-structure

STRUCTURE OF THE RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE

3d-resolution

1.80A

3d-r-factors

working 19.900%, free 22.100%